広告掲載
MCP.so
ログイン

Bio-OS MCP Server

@GBA-BI

リポジトリ

基本情報

カテゴリ

生産性

ライセンス

MIT

トランスポート

stdio

作者

GBA-BI

Bio-OS MCP Server について

The MCP Servers for Bio-OS instance platforms.

Bio-OS MCP Server の設定

標準の設定はありません

このサーバーの README には解析可能な MCP 設定ブロックが含まれていません。インストール手順はリポジトリをご確認ください。

リポジトリ

Bio-OS MCP Server のツール

12

Submit Bio-OS workflow

ak: Access Key

Upload WDL workflow to Bio-OS system

ak: Access Key

Validate WDL workflow script

wdl_path: WDL file path

Generate WDL input file template

wdl_path: WDL file path

Build Docker image

registry: Image registry address

Check Docker image build status

task_id: Build task ID

概要

What is Bio-OS MCP Server?

Bio-OS MCP Server is a Model Context Protocol (MCP) based tool and prompt server for Bio-OS that provides workflow management and Docker image building capabilities. It is intended for users who need to interact with Bio-OS workflows and Docker image builds through an MCP-compatible client like CLINE or Claude Desktop.

How to use Bio-OS MCP Server?

Install dependencies (uv, Cromwell), clone the repository, and configure the server’s path and environment variables (MIRACLE_ACCESS_KEY, MIRACLE_SECRET_KEY) in CLINE’s MCP settings. Alternatively, use a pre‑configured Docker image in a Miracle Cloud IES instance. For optimal experience with CLINE, copy the contents of bioos-mcp-prompt.md into CLINE’s Custom Instructions.

Key features of Bio-OS MCP Server

  • Submit and monitor Bio-OS workflows
  • Upload and validate WDL workflow scripts
  • Generate WDL input file templates
  • Build Docker images and check build status
  • Retrieve Docker build progress and logs
  • Provides five MCP prompts for guided development

Use cases of Bio-OS MCP Server

  • Submitting a Bio-OS workflow with an input JSON
  • Validating a WDL script before submission
  • Generating a template for WDL input parameters
  • Building a Docker image from a Dockerfile or archive
  • Monitoring the status of an ongoing Docker build

よくある質問

1

What dependencies does Bio-OS MCP Server require?

It requires uv (Python package manager) and Cromwell (workflow execution engine).

2

How do I configure the server environment?

Set `MIRACLE_ACCESS_KEY` and `MIRACLE_SECRET_KEY` in the environment, and specify the absolute paths to uv, the server script, and the source directory in CLINE’s MCP settings.

3

Are MCP prompts supported in CLINE?

No, CLINE does not yet support MCP Prompts. For the best experience, copy `bioos-mcp-prompt.md` into CLINE’s Custom Instructions.

4

What deployment options are available?

You can install locally on your machine or use a pre‑configured Docker image inside a Miracle Cloud IES instance accessed via Code Server.

5

Which tools does the server expose?

It exposes six tools: `submit_workflow`, `import_workflow`, `validate_wdl`, `generate_inputs`, `build_docker_image`, and `check_build_status`.

コメント

「生産性」の他のコンテンツ

Local MCP (LMCP)

lanchuske

Local tools that let your AI use Mail, Calendar, Contacts, Teams, Slack, WhatsApp, OneDrive, Google Drive, Notion, Outlook and Office files on Mac and Windows. Runs on your computer.

54

42min

42min

Official 42min MCP server: let Claude, ChatGPT, Cursor or any MCP client manage your meeting scheduling. Check availability, find free slots, book, cancel and reschedule meetings, manage recurring series, secret booking

Snipzr

Snipzr

Snipzr (snipzr.com) is a URL shortener. Its remote MCP server lets your AI assistant create and batch-create short links on your own domain, update and list them, read cookie-less click stats with bots shown separately,

crosscode-cli

amsultan2010

Multiplayer coding in the agentic era through an MCP server for real-time codebase sync between your agents.

1

TRMNL

TRMNL

Run your TRMNL ePaper displays from any AI agent: check on devices, plan playlists and build new screens from your own data.

広告掲載