20 #bioinformatics MCP Servers & Clients
Every MCP server and client below is tagged #bioinformatics — install one to give Claude, Cursor, VS Code, or any other MCP-compatible client access to bioinformatics tools.
All
BioMCP: Biomedical Model Context Protocol
genomoncology
BioMCP: Biomedical Model Context Protocol
Encode Toolkit
ammawla
MCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments
biothings-mcp
longevity-genie
MCP (Model Context Protocol) server for biothings
Pdb Mcp Server
Augmented-Nature
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
BioRxiv MCP Server
JackKuo666
🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.
Unofficial UniProt MCP Server
Augmented-Nature
A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.
GWAS Catalog MCP Server
koido
Chatspatial
cafferychen777
Natural language-driven spatial transcriptomics analysis via MCP. Integrates 60+ analytical methods across 15 categories including preprocessing, visualization, spatial statistics, cell communication, deconvolution, and trajectory analysis.
Ranomics Platform
leowan7
Wet-lab triage for AI binder-design agents. Submit computational protein designs, get back yeast-display enrichment and called hits.
Unofficial Ensembl MCP Server
Augmented-Nature
A comprehensive Model Context Protocol (MCP) server that provides access to the Ensembl REST API for genomic data, comparative genomics, and biological annotations.
🧬 Ensembl API MCP Server
effieklimi
A full-featured Model Context Protocol (MCP) server that exposes Ensembl’s REST API. Built using the TypeScript MCP SDK
ChemBL MCP Server
EazyAl
Liftover MCP server
koido
gnomAD MCP Server
koido
This MCP server provides a programmatic interface to the Genome Aggregation Database (gnomAD) API, supporting multiple API versions (v2.1.1, v3.1.2, v4.1.0).
Alphafold Mcp Server
Augmented-Nature
A comprehensive Model Context Protocol (MCP) server that provides access to the AlphaFold Protein Structure Database through a rich set of tools and resources for protein structure prediction analysis.
longevity-mcp
longevity-genie
Bio MCP server that deals with longevity databases (open-genes, genage and so on)
bio-mcp-servers
kleonai
A compilation for all the available bio agent
Bioconda-MCP-Server
JackKuo666
Biomcp
gucci10248
50+ biomedical databases unified behind one MCP
biostudies-mcp-server
EBIBioStudies
Frequently asked questions
What is a #bioinformatics MCP server?
- An MCP server tagged #bioinformatics implements the Model Context Protocol so AI assistants like Claude, Cursor, and VS Code can access bioinformatics-related tools, data, or APIs.
How many #bioinformatics MCP servers and clients are there?
- mcp.so currently lists 20 MCP servers and clients tagged #bioinformatics.
How do I install a #bioinformatics MCP server?
- Open any server below and copy its install snippet into Claude Desktop, Cursor, VS Code, or another MCP client's configuration — remote servers need no separate download.