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Biomcp MCP Server

@gucci10248

Repository

Basic information

Category

Other

Transports

stdio

Author

gucci10248

Submitted by

Jack Gucci

About Biomcp MCP Server

50+ biomedical databases unified behind one MCP

#biomedical#bioinformatics#pubmed#clinical-trials#genomics#research

Biomcp MCP Server config

Add this server to your MCP-compatible client using the configuration below.

{
  "mcpServers": {
    "biomcp": {
      "type": "http",
      "url": "https://merit-bristol-provisions-revisions.trycloudflare.com/mcp"
    }
  }
}

Biomcp MCP Server tools

Tool list not available yet

This listing does not currently have a tool list to display. This does not mean the server has no tools; check its documentation for supported capabilities.

Fetch the live tool list directly from this server's endpoint using the button above.

Overview

What is Biomcp?

Biomcp is a read‑only biomedical MCP server that connects to over 50 biomedical databases including PubMed, ClinicalTrials.gov, ClinVar, gnomAD, OncoKB, Reactome, KEGG, UniProt, PharmGKB, CPIC, OpenFDA, Monarch Initiative, GWAS Catalog, and more. It is designed for researchers and clinicians who need unified access to diverse biomedical data.

How to use Biomcp?

Pull the Docker image with docker pull jackgucci/biomcp:0.8.22 and run the container exposing port 8080: docker run -d -p 8080:8080 jackgucci/biomcp:0.8.22. Verify the server is running by testing the health endpoint: curl http://localhost:8080/health.

Key features of Biomcp

  • Connects to 50+ biomedical databases in one command.
  • Read‑only access to curated biomedical data.
  • Simple Docker‑based setup and deployment.
  • Provides a unified JSON‑RPC interface via MCP protocol.
  • Includes a health check endpoint for easy monitoring.

Use cases of Biomcp

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FAQ from Biomcp

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Comments

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