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Ranomics Platform MCP Server

@leowan7

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leowan7

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leowan7

Ranomics Platform MCP Server について

Wet-lab triage for AI binder-design agents. Submit computational protein designs, get back yeast-display enrichment and called hits.

#protein-design#antibody#binder#yeast-display#mammalian-display#deep-mutational-scanning#wet-lab#biotechnology#drug-discovery#ai-agents#bioinformatics

Ranomics Platform MCP Server の設定

以下の設定を使って、このサーバーを MCP 対応クライアントに追加してください。

{
  "mcpServers": {
    "ranomics": {
      "url": "https://mcp.ranomics.com/mcp",
      "headers": {
        "Authorization": "Bearer rk_live_..."
      }
    }
  }
}

Ranomics Platform MCP Server のツール

7

List the calibrated antigen catalogue. Each entry carries target_id, supported_experiment_types, and typical_campaign_range_usd. Use the target_id on submit_experiment to skip human scoping, or use the custom target shape for a one-off antigen.

Non-binding USD cost estimate for a hypothetical submission. Pass target_kind='catalog' + target_id for a calibrated band (requires_human_quote=false), or target_kind='custom' for a placeholder order-of-magnitude band (requires_human_quote=true). Call BEFORE submit_experiment when budgeting matters.

Submit a binder panel for wet-lab triage. The experiment_spec mirrors the curl /api/v1/experiments contract: experiment_type (yeast_display/mammalian_display/dms), target (target_id or custom), library_design, and sequences as {user_key: amino_acid_string} (use ':' as a multi-chain separator). Optional webhook_url receives signed POSTs on every status transition. Optional idempotency_key dedupes retries. Returns the created experiment with status WaitingForConfirmation and a status_log. Poll get_experiment_status to track progress, get_experiment_results when status_log shows Done.

Poll an experiment by id. Returns the current status (Draft/WaitingForConfirmation/QuoteSent/WaitingForMaterials/LibraryConstruction/Sorting/NGS/DataAnalysis/InReview/Done), the orthogonal results_status (none/partial/all), and the status_log. Cheap; safe to poll every few minutes. Webhooks are preferred for production agents.

Fetch the quote for an experiment once status is QuoteSent. Returns quote_id, total_usd, currency (default USD), line_items, valid_until, and terms_url. If status is QuoteSent but the scoping team has not posted a price yet, total_usd is null and a 'note' field explains it is being finalised; poll again until total_usd populates. Pass the quote_id to confirm_quote to accept.

Accept a quote. Moves the experiment from QuoteSent to WaitingForMaterials. Call after a human (or budget guard) has approved the total_usd from get_experiment_quote. Returns 409 quote_not_confirmable if status is not QuoteSent, or 409 quote_not_finalized if a price has not been posted yet (total_usd null). Fetch get_experiment_quote and wait for total_usd before confirming.

Fetch results once results_status is 'partial' or 'all' (check via get_experiment_status first). Returns per-sequence pre/post counts, log2_enrichment, percentile, called_hit booleans, plus signed download URLs for the enrichment table CSV, hits FASTA, and (when opted in) raw FASTQ. Yeast-display result shape; mammalian and DMS use the same envelope.

概要

What is Ranomics Platform?

The Ranomics MCP server gives AI binder-design agents programmatic access to wet-lab validation through the Ranomics Platform. It is designed for workflows that need to triage thousands of computationally designed protein or antibody candidates before committing to per-sequence biophysics.

How to use Ranomics Platform?

Obtain a Bearer token from https://tools.ranomics.com/account/api-keys and configure the server with that token. Then invoke any of the seven tools: list_targets, estimate_cost, submit_experiment, get_experiment_status, get_experiment_quote, confirm_quote, or get_experiment_results.

Key features of Ranomics Platform?

  • Programmatic access to wet-lab protein validation
  • Supports yeast surface display, mammalian display, DMS
  • Returns enrichment ratios, NGS counts, and called hits
  • Designed for AI workflows with 10,000+ candidates
  • Seven tools cover the full experiment lifecycle
  • Uses streamable-http transport with Bearer token auth

Use cases of Ranomics Platform?

  • Enrich top candidates from MPNN or RFdiffusion designs
  • Triage BindCraft antibody candidates before biophysics
  • Validate large panels of computationally designed proteins
  • Integrate wet-lab screening directly into AI agent pipelines

よくある質問

1

What authentication is required?

A Bearer token from https://tools.ranomics.com/account/api-keys must be provided.

2

What transport protocol does the server use?

Streamable HTTP.

3

How many candidates can be submitted in one experiment?

The server is designed for workflows with 10,000+ candidates, enabling

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