広告掲載
MCP.so
ログイン

CIViC MCP Server

@QuentinCody

リポジトリ

基本情報

カテゴリ

その他

ライセンス

NOASSERTION

トランスポート

stdio

作者

QuentinCody

CIViC MCP Server について

概要はまだありません

CIViC MCP Server の設定

標準の設定はありません

このサーバーの README には解析可能な MCP 設定ブロックが含まれていません。インストール手順はリポジトリをご確認ください。

リポジトリ

CIViC MCP Server のツール

ツール一覧はまだありません

この掲載には表示できるツール一覧がまだありません。サーバーにツールがないという意味ではありません。対応機能はプロジェクトのドキュメントをご確認ください。

ツールは README から自動的に抽出されます。メンテナーは ## Tools という見出しの下に記載することで、このタブに反映できます。

概要

What is CIViC MCP Server?

This Cloudflare Workers-based MCP server provides tools for querying the CIViC (Clinical Interpretation of Variants in Cancer) API. It converts GraphQL responses into queryable SQLite tables using Durable Objects, enabling AI assistants to analyze cancer genomics information through natural language.

How to use CIViC MCP Server?

Deploy the server to Cloudflare Workers (npm install && npm run deploy), then configure Claude Desktop with mcp-remote pointing to the deployed URL. Once configured, Claude can use three tools: civic_graphql_query, civic_query_sql, and civic_execute. Three MCP prompts (get-variant-evidence, get-variant-assertions, get-variant-data) guide the model with correct GraphQL syntax.

Key features of CIViC MCP Server

  • GraphQL to SQL conversion into structured SQLite tables
  • Efficient data storage via Cloudflare Durable Objects with SQLite
  • Smart response handling: bypasses staging for small, error, empty, or schema introspection responses
  • Tool pipeline: GraphQL query, SQL analysis, and Code Mode (JavaScript execution)
  • MCP 2025-06-18 compliance with Streamable HTTP transport
  • Three MCP prompts for guided, fallback-aware GraphQL queries

Use cases of CIViC MCP Server

  • Query the latest evidence items for specific mutations (e.g., BRAF V600E)
  • Retrieve therapeutic interpretations for lung cancer variants
  • Find genes with the most evidence items in the CIViC database
  • Analyze staged data using custom SQL queries
  • Use Code Mode to run JavaScript against the CIViC GraphQL API in a V8 isolate

よくある質問

1

What is the CIViC database?

CIViC (Clinical Interpretation of Variants in Cancer) is a crowd-sourced repository of clinical interpretations of cancer variants.

2

What tools does the server provide?

Three tools: `civic_graphql_query` (execute GraphQL queries), `civic_query_sql` (query staged data with SQL), and `civic_execute` (run JavaScript in a V8 isolate with full GraphQL access).

3

How do I deploy the server?

Requires a Cloudflare account and Wrangler CLI. Clone the repository, run `npm install`, then `npm run deploy`. After deployment, use the obtained URL in Claude Desktop configuration.

4

What transport protocol does the server use?

It uses Streamable HTTP transport (MCP 2025-03-26+) served at the `/mcp` endpoint. Legacy HTTP+SSE transport has been removed.

5

Is OAuth 2.1 authorization supported?

OAuth 2.1 is not implemented yet. The README notes it as pending action, requiring Authorization Server discovery, Resource Indicators (RFC 8707), and PKCE-enabled authorization code flow.

コメント

「その他」の他のコンテンツ

Arsen MCP

Arsen Security

Run advanced phishing, voice phishing, deepfake fraud simulations, and cybersecurity awareness training from your AI assistant.

Figs, Relationship Expert

Figs O'Sullivan, LMFT

Couples therapist Figs O'Sullivan (LMFT, 17 years, endorsed by Sue Johnson, creator of EFT) inside your AI. Ask relationship questions answered from his clinical writing, name the pattern in a fight, get a three-step rep

Sequential Thinking

modelcontextprotocol

Model Context Protocol Servers

88.2K

Volley.sh

Volley

A good sequence diagram can solve almost any communication problem in engineering. Volley lets your agent write them as plain text, with the real request and response payloads on every arrow. It checks its own syntax wi

Handl

Handl speaks the Model Context Protocol. Your whole billing operation — projects, invoices, clients, reports, approvals — as tools any AI assistant can call, inside your autonomy rules.

広告掲載