広告掲載
MCP.so
ログイン

Unofficial UniProt MCP Server

@Augmented-Nature

リポジトリ

基本情報

カテゴリ

その他

ライセンス

NOASSERTION

トランスポート

stdio

作者

Augmented-Nature

Unofficial UniProt MCP Server について

A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.

#bioinformatics#proteomics#drug-discovery

Unofficial UniProt MCP Server の設定

以下の設定を使って、このサーバーを MCP 対応クライアントに追加してください。

{
  "mcpServers": {
    "augmented-nature-uniprot-mcp-server-augmented-nature": {
      "command": "docker",
      "args": [
        "build",
        "-t",
        "uniprot-mcp-server",
        "."
      ]
    }
  }
}

Unofficial UniProt MCP Server のツール

ツール一覧はまだありません

この掲載には表示できるツール一覧がまだありません。サーバーにツールがないという意味ではありません。対応機能はプロジェクトのドキュメントをご確認ください。

ツールは README から自動的に抽出されます。メンテナーは ## Tools という見出しの下に記載することで、このタブに反映できます。

概要

What is Unofficial UniProt MCP Server?

An MCP server that provides 26 specialized bioinformatics tools for accessing the UniProt protein database via its REST API, enabling AI assistants and MCP clients to perform protein research, comparative genomics, structural biology, and systems biology analyses.

How to use Unofficial UniProt MCP Server?

Install Node.js v16+, clone the repository, run npm install and npm build, then start with npm start or add the server to an MCP client (e.g., Claude Desktop) using the JSON configuration provided. Docker deployment is also supported: build the image with docker build -t uniprot-mcp-server and run with docker run -i uniprot-mcp-server.

Key features of Unofficial UniProt MCP Server

  • 26 distinct bioinformatics tools across eight categories
  • Core protein search, info, gene-based search, sequence retrieval, and feature analysis
  • Comparative and evolutionary analysis (homologs, orthologs, phylogenetic data)
  • Structure and function analysis (3D PDB, domains, variants, sequence composition)
  • Biological context tools (pathways, interactions, GO terms, subcellular localization)
  • Batch processing and advanced search with multiple filters
  • Literature and cross-reference retrieval (external DB links, publications)
  • Data export in GFF, GenBank, EMBL, XML formats and URI resource templates

Use cases of Unofficial UniProt MCP Server

  • Search UniProt for proteins by name, keyword, or organism (e.g., human insulin)
  • Retrieve comprehensive information for a specific protein by accession number
  • Find proteins associated with a gene name (e.g., BRCA1) filtered by organism
  • Obtain amino acid sequences in FASTA or JSON format
  • Analyze functional domains, active sites, and other features of a protein

よくある質問

1

What are the prerequisites for installation?

Node.js v16 or higher and npm or yarn are required.

2

How do I configure the server in an MCP client like Claude Desktop?

Add the following to your MCP client config: `{"mcpServers": {"uniprot": {"command": "node", "args": ["/path/to/build/index.js"], "env": {}}}}`.

3

Which API does this server use?

It integrates with the UniProt REST API (`https://rest.uniprot.org`), setting a User-Agent header (`UniProt-MCP-Server/1.0.0`) and a 30‑second timeout.

4

What output formats are supported?

Results can be returned in JSON, TSV, FASTA, or XML format, depending on the tool.

5

Is Docker deployment available?

Yes. You can build a Docker image and run it with `docker run -i uniprot-mcp-server`, or use Docker Compose for easier management.

コメント

「その他」の他のコンテンツ

The Living Bread

The Living Bread

A free remote MCP server for The Living Bread. Bible passages read word for word from a stored public domain text with an evidence label, keyword search and cross references, real churches, gatherings and prayer groups w

Glasswarp

Glasswarp

See and control a real Windows PC you own — from any MCP client, locally or remotely. Observe (UIA + screenshots), click/type/drag/scroll, launch apps, owner Live View. BYOH: your machine, your key.

Soar Flight Booking MCP

Soar Flight Booking MCP is a remote MCP server available at https://mcp.soar.flights.

Handl

Handl speaks the Model Context Protocol. Your whole billing operation — projects, invoices, clients, reports, approvals — as tools any AI assistant can call, inside your autonomy rules.

DeepMark

DeepMark helps teachers deliver rapid, consistent marking with meaningful feedback for every student — in a fraction of the time. What once took a week, now takes one free period.

広告掲載