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Biomart MCP Server

@jzinno

Repository

Basic information

Category

Other

License

MIT

Transports

stdio

Author

jzinno

About Biomart MCP Server

A MCP server to interface with Biomart

Biomart MCP Server config

Add this server to your MCP-compatible client using the configuration below.

{
  "mcpServers": {
    "biomart-mcp": {
      "command": "npx",
      "args": [
        "-y",
        "@smithery/cli",
        "install",
        "@jzinno/biomart-mcp",
        "--client",
        "claude"
      ]
    }
  }
}

Biomart MCP Server tools

Tool list not available yet

This listing does not currently have a tool list to display. This does not mean the server has no tools; check its documentation for supported capabilities.

Fetch the live tool list by running this server in a temporary sandbox using the button above.

Overview

What is Biomart MCP?

Biomart MCP is a Model Context Protocol server that provides a programmatic interface to Biomart databases via the pybiomart package. It allows LLMs to discover marts and datasets, explore attributes and filters, retrieve biological data, and translate biological identifiers.

How to use Biomart MCP?

Install via Smithery (npx -y @smithery/cli install @jzinno/biomart-mcp --client claude) or by cloning the repository and configuring for Claude Desktop with `uv run

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