@cyanheads
基本信息
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.
使用下面的配置,将此服务器添加到你的 MCP 客户端。
{
"mcpServers": {
"pubmed-mcp-server": {
"type": "stdio",
"command": "npx",
"args": [
"-y",
"@cyanheads/pubmed-mcp-server@latest"
],
"env": {
"MCP_TRANSPORT_TYPE": "stdio",
"MCP_LOG_LEVEL": "info",
"NCBI_API_KEY": "your-key-here"
}
}
}
}Search PubMed with full query syntax, filters, and date ranges. Returns PMIDs and optional brief summaries. Supports field-specific filters (author, journal, MeSH terms), common filters (language, species, free full text), and pagination via offset for paging through large result sets.
Fetch full article metadata by PubMed IDs. Returns detailed article information including abstract, authors, journal, MeSH terms.
Fetch full-text articles from PubMed Central with structured sections and references. When PMC misses, transparently falls back to Europe PMC `fullTextXML` (structured JATS for records with a PMC counterpart). Provide exactly one of `pmcids` (PMC IDs directly), `pmids` (PubMed IDs, auto-resolved), or `dois` (DOIs, auto-resolved to PMC via the ID Converter; preprints with a PMC counterpart recover via Europe PMC).
Get formatted citations for PubMed articles in one or more formats (apa, mla, bibtex, ris, vancouver). Pass a single format as a string or multiple as an array.
Find articles related to a source article — similar content (similar), articles citing this one (cited_by), or articles this one cites (references). Uses NCBI ELink as the primary source; falls back to Europe PMC then OpenAlex when NCBI is unavailable.
Spell-check a query and get NCBI's suggested correction. Useful for refining search queries.
Search and explore the MeSH (Medical Subject Headings) controlled vocabulary. Returns descriptor records with tree numbers, scope notes, and entry terms, plus pagination via offset for paging past the maxResults cap.
Look up PubMed IDs from partial bibliographic citations. Useful when you have a reference (journal, year, volume, page, author) and need the PMID — deterministic citation matching, more reliable than free-text search for structured references. Each citation must include at least journal or year (ECitMatch primary-keys on journal+volume+page; author-only or volume-only inputs guarantee no match); more fields = better match accuracy.
Convert between article identifiers (DOI, PMID, PMCID). Accepts up to 50 IDs of a single type per request. Only resolves articles indexed in PubMed Central — for articles not in PMC, use pubmed_search_articles instead.
Search Europe PMC, a broad open-access biomedical corpus. Surfaces preprints (`source: PPR`), patents (`source: PAT`), Agricola (`source: AGR`), plus everything in PubMed (`MED`) and PMC. Use when additional coverage is needed — preprints and EPMC-only OA records are the typical recovery. Paginate via `cursorMark`. Defaults to `MED`, `PMC`, and `PPR`; pass `sources` to include `PAT` / `AGR`. Abstracts arrive as a bounded `abstractSnippet` with `abstractTruncated` marking the cut ones — pass a hit’s `source` and `epmcId` to `pubmed_europepmc_fetch` for the complete abstract.
Fetch complete Europe PMC records — including the full, untruncated abstract — for records addressed by `source` plus `epmcId`. Pairs with `pubmed_europepmc_search`, which returns bounded `abstractSnippet` values and flags cut ones with `abstractTruncated: true`; pass those hits' `source` and `epmcId` here to read the whole abstract. This is the retrieval path for preprint (`PPR`), patent (`PAT`), and Agricola (`AGR`) records, which frequently carry no PMID and no DOI, so `pubmed_fetch_articles` and `pubmed_fetch_fulltext` cannot address them. Up to 25 records per call.
A biomedical literature retrieval server that integrates PubMed, Europe PMC, and Unpaywall into MCP. It offers 10 tools for searching articles, fetching metadata and full text, formatting citations, exploring MeSH terms, and converting identifiers. Designed for researchers, clinicians, and AI agents needing structured access to life‑science publications.
Use the public hosted instance at https://pubmed.caseyjhand.com/mcp via Streamable HTTP with any MCP client, or self‑host locally using bunx @cyanheads/pubmed-mcp-server@latest in stdio mode. One‑click install buttons are available for Claude Desktop, Cursor, and VS Code.
research_plan prompt`pubmed_search_articles` uses NCBI E‑utilities and returns only PubMed‑indexed articles. `pubmed_europepmc_search` queries Europe PMC and also covers preprints, patents, and Agricola records not found in PubMed.
`pubmed_fetch_fulltext` tries NCBI PMC EFetch first, falls back to Europe PMC `fullTextXML`, then to Unpaywall for legal OA copies. The source of each result is marked (`pmc`, `europepmc`, or `unpaywall`). Unpaywall requires setting `UNPAYWALL_EMAIL`.
APA 7th, MLA 9th, BibTeX, RIS, and Vancouver (ICMJE/NLM). All formatters are hand‑rolled with zero external dependencies.
Add it to your MCP client config with `"command": "bunx", "args": ["@cyanheads/pubmed-mcp-server@latest"]` and set `"MCP_TRANSPORT_TYPE": "stdio"`. Alternatively, use the public HTTP endpoint.
Fetch articles: up to 200. Full text: up to 10. Citations: up to 50. ID conversion: up to 50. Citation lookup: up to 25. Larger requests return per‑item results with structured errors, not batch failures.
US defense and homeland security contract awards (DoD and DHS since FY2024) plus daily Pentagon contract announcements. Includes a free sample tool, award search ($0.02/call), company profiles ($0.02/call), daily top 200
Investigate any website's technology stack: CMS, eCommerce, frameworks, analytics, CRM, payments, and hosting behind any URL. Ask "which of these 15 prospects use HubSpot vs Salesforce?" and get a table back. Free tier:
17 tools for marketing and SEO research inside Claude Code, Cursor, Codex or ChatGPT: the ads any domain runs on Meta and Google, how a product grew from 12 public sources with every claim linked, your own Search Console
Privacy-first, cookieless web analytics hosted in the EU. Query visitors, pages, traffic sources, countries, goals, funnels and live traffic for your sites, and create sites, goals and funnels — 25 tools over OAuth.
Connect the free QQQ AI Visibility Checker to Claude, ChatGPT, Cursor or VS Code: a public MCP server at https://qqq.ee/mcp, no API key, two read-only tools.
评论