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pubchem MCP server

@sssjiang

代码仓库

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其他

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stdio

作者

sssjiang

关于 pubchem MCP server

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#pubchem#mcp#drug-information

pubchem MCP server 配置

使用下面的配置,将此服务器添加到你的 MCP 客户端。

{
  "mcpServers": {
    "pubchem": {
      "command": "uvx",
      "args": [
        "pubchem_mcp_server"
      ]
    }
  }
}

pubchem MCP server 工具

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当前收录暂时没有可展示的工具列表，不代表服务没有工具。请查阅项目文档了解支持的能力。

点击上方按钮,在临时沙箱中运行此服务器并实时获取工具列表。

概览

What is pubchem mcp server?

It is an MCP server that extracts basic chemical information of drugs from the PubChem API. It is intended for users who need quick access to chemical properties, identifiers, and synonyms for drug compounds.

How to use pubchem mcp server?

Install dependencies (Python 3.10, python-dotenv, requests, mcp, uvicorn) via pip, then configure the server in a servers_config.json file following Claude Desktop's MCP server structure using the command "uvx" with argument "pubchem_mcp_server".

Key features of pubchem mcp server

  • Extracts drug basic chemical information from the PubChem API
  • Returns molecular weight, formula, SMILES, and IUPAC name
  • Provides CAS number, InChI Key, and ATC Code
  • Outputs structured JSON with synonyms and detail link
  • Integrates with Claude Desktop via the MCP protocol
  • Requires Python 3.10 and minimal dependencies

Use cases of pubchem mcp server

  • Retrieve chemical properties for a given drug name
  • Obtain synonyms and identifiers for compound searching
  • Automate drug information lookup in Claude Desktop workflows
  • Access PubChem data for chemical informatics or research

常见问题

1

What does pubchem mcp server do?

It extracts basic chemical information of a drug from the PubChem API, including molecular formula, weight, synonyms, and identifiers like CAS and InChI Key.

2

What are the runtime requirements?

Python 3.10 is required, along with the packages: python-dotenv, requests, mcp, and uvicorn.

3

How is the server configured?

The server is configured via a `servers_config.json` file following Claude Desktop's MCP server structure, using the command `"uvx"` with arguments `["pubchem_mcp_server"]`.

4

Where does the data come from?

Data is retrieved from the PubChem API, as described in the README.

5

What transport or authentication is used?

The README does not specify transport or authentication details; it only describes integration via the MCP protocol and installation steps.

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