Medical Mcps MCP Server

@pascalwhoop

代码仓库

基本信息

分类

其他

传输方式

stdio

作者

pascalwhoop

提交者

Pascal Bro

关于 Medical Mcps MCP Server

暂无概览

#medical-mcps#biological-apis#medical-databases

Medical Mcps MCP Server 配置

使用下面的配置,将此服务器添加到你的 MCP 客户端。

{
  "mcpServers": {
    "medical-mcps-api": {
      "type": "http",
      "url": "https://medical-mcps-production.up.railway.app/tools/unified/mcp"
    }
  }
}

Medical Mcps MCP Server 工具

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概览

What is Medical Mcps?

Medical Mcps is an MCP server that integrates multiple biological and medical databases for research purposes. It provides over 100 tools across 14 APIs covering pathways, genes, variants, diseases, drugs, literature, and clinical trials.

How to use Medical Mcps?

Configure it in an MCP client (e.g., Cursor) by adding the production URL https://medical-mcps-production.up.railway.app/tools/unified/mcp to your .cursor/mcp.json. Once connected, you can call any of the 100+ tools, such as mygene_get_gene for gene information. For local development, use Docker Compose or run the server directly with uv run mcp-server.

Key features of Medical Mcps

Unified endpoint to access all 14 APIs in one connection
Individual API endpoints for selective tool access
Supports local deployment via Docker Compose or Python/uv
HTTP caching with 30-day default TTL (hishel, per-API SQLite files)
Optional Sentry integration for error tracking and performance monitoring
Uses Streamable HTTP transport per MCP specification

Use cases of Medical Mcps

Retrieve pathway and gene data from Reactome, KEGG, or Pathway Commons
Search for drug-target interactions and bioactivity data via ChEMBL
Query clinical trial metadata from ClinicalTrials.gov and NCI
Look up genetic variant annotations and population frequencies with MyVariant.info
Explore drug repurposing strategies using structured playbooks

常见问题

What runtime/requirements does Medical Mcps need?

For local development, Python with `uv` is required; Docker Compose is recommended for quick setup.

How do I configure Medical Mcps in Cursor?

Add the production URL `https://medical-mcps-production.up.railway.app/tools/unified/mcp` to the `mcpServers` object in your `.cursor/mcp.json` file.

Does Medical Mcps require API keys for any services?

Yes, OMIM and NCI Clinical Trials require API keys. These are configured via environment variables or passed when initializing the respective clients.

How can I test if the production server is accessible?

Send a POST request with a JSON-RPC initialize message to the unified endpoint, e.g., using `curl` with the URL `/tools/unified/mcp`.

Can I access individual APIs separately instead of using the unified endpoint?

Yes. Each API has its own endpoint (e.g., `/tools/reactome/mcp`) that you can configure as a separate MCP server in your client.

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