Chembl Mcp Server

Name: Chembl Mcp Server
Author: Augmented-Nature

@Augmented-Nature

关于 Chembl Mcp Server

A comprehensive Model Context Protocol (MCP) server providing advanced access to the ChEMBL chemical database. This server offers 22 specialized tools enabling AI assistants and MCP clients to perform sophisticated drug discovery research, chemical informatics analysis, and bioac

#chembl #drug-discovery #chemical-informatics

基本信息

分类

其他

传输方式

stdio

发布者

Augmented-Nature

提交者

Moudather Chelbi

配置

使用下面的配置,将此服务器添加到你的 MCP 客户端。

{
  "mcpServers": {
    "chembl-mcp-server-augmented-nature": {
      "command": "docker",
      "args": [
        "build",
        "-t",
        "chembl-mcp-server",
        "."
      ]
    }
  }
}

工具

未检测到工具

工具是从 README 中自动提取的。维护者可以在 ## Tools 标题下列出工具,即可填充这部分内容。

概览

What is Chembl Mcp Server?

Chembl Mcp Server is an unofficial MCP server that provides AI assistants with 22 specialized tools to access the ChEMBL chemical database via its REST API. It enables drug discovery research, chemical informatics, and bioactivity analysis for researchers and developers.

How to use Chembl Mcp Server?

Install Node.js v16+, clone the repository, run npm install then npm run build. Start the server with npm start and add the configuration to your MCP client (e.g., Claude Desktop) specifying the path to build/index.js. Alternatively, you can build and run a Docker container using docker build -t chembl-mcp-server and run it interactively.

Key features of Chembl Mcp Server

22 tools for chemical search, target analysis, and bioactivity data
Compound search by name, synonym, identifier, or InChI
Target search, pathways, and UniProt integration
Bioactivity search with dose-response and activity comparison
Drug development, clinical data, and ADMET analysis
Substructure search, batch processing, and external references

Use cases of Chembl Mcp Server

Search for compounds and retrieve detailed chemical properties
Identify biological targets and find associated compounds
Analyze bioactivity measurements and dose-response data
Assess drug-likeness and ADMET properties of candidate molecules
Batch lookup of multiple ChEMBL IDs for efficient research

FAQ from Chembl Mcp Server

What dependencies are required to run Chembl Mcp Server?

Node.js v16 or higher, npm or yarn, and the npm packages @modelcontextprotocol/sdk, axios, and TypeScript.

How does the server communicate with an MCP client?

It runs as an MCP server that communicates via stdio. You add it to your MCP client configuration (e.g., Claude Desktop) using a command or Docker run command.

Can I use Docker to run Chembl Mcp Server?

Yes, you can build an image with docker build -t chembl-mcp-server and run it with docker run -i chembl-mcp-server. The README provides an example configuration for MCP client integration.

What API does the server connect to?

It connects to the ChEMBL REST API at https://www.ebi.ac.uk/chembl/api/data. Requests include a User-Agent header and a 30-second timeout.

Are there any limits on tool parameters?

The search_compounds and search_activities tools accept a limit parameter from 1 to 1000 (default 25). The batch_compound_lookup tool accepts an array of 1 to 50 ChEMBL IDs.