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BioRxiv MCP Server

@JackKuo666

代码仓库

基本信息

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其他

传输方式

stdio

作者

JackKuo666

提交者

lyonlin

关于 BioRxiv MCP Server

🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.

#biorxiv#bioinformatics#research-assistant

BioRxiv MCP Server 配置

使用下面的配置,将此服务器添加到你的 MCP 客户端。

{
  "mcpServers": {
    "biorxiv": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-bioRxiv/.venv/bin/activate && python /home/YOUR/PATH/mcp-server-bioRxiv/biorxiv_server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}

BioRxiv MCP Server 工具

工具列表暂未提供

当前收录暂时没有可展示的工具列表，不代表服务没有工具。请查阅项目文档了解支持的能力。

工具是从 README 中自动提取的。维护者可以在 ## Tools 标题下列出工具,即可填充这部分内容。

概览

What is BioRxiv MCP Server?

The BioRxiv MCP Server bridges AI assistants and bioRxiv's preprint repository through the Model Context Protocol (MCP). It allows AI models to search for biology preprints and access their metadata programmatically. It is designed for researchers and AI users who need to query bioRxiv content.

How to use BioRxiv MCP Server?

Install the server by cloning the repository and running pip install -r requirements.txt, or use Smithery for Claude/Cursor/Windsurf/CLine. Start the server with python biorxiv_server.py and add the MCP configuration to your client’s config file. Ask the AI assistant to search papers using keywords or to retrieve metadata by DOI.

Key features of BioRxiv MCP Server

  • Paper search with keywords or advanced queries
  • Fast retrieval of paper metadata
  • Access detailed metadata for specific papers
  • Download and read full paper content
  • Local storage of papers for faster access
  • Specialized prompts for paper analysis

Use cases of BioRxiv MCP Server

  • Search for recent bioRxiv papers about a specific topic
  • Retrieve full metadata for a known preprint DOI
  • Download papers for offline reading and analysis
  • Automate literature surveys with AI assistance

常见问题

1

What are the prerequisites to run the server?

Python 3.10 or higher and the FastMCP library are required.

2

How can I install the server automatically via Smithery?

Run the Smithery CLI command for your client (e.g., `npx -y @smithery/cli@latest install @JackKuo666/biorxiv-mcp-server --client claude --config "{}"`).

3

What MCP tools does the server provide?

Three tools: `search_biorxiv_key_words`, `search_biorxiv_advanced`, and `get_biorxiv_metadata` (using a DOI).

4

Where are downloaded papers stored?

Papers are saved locally on your machine for faster subsequent access.

5

Is this tool intended for commercial use?

No – the disclaimer states the tool is for research purposes only, and users must respect bioRxiv’s terms of service.

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