Unofficial Human Protein Atlas MCP Server
@Augmented-Nature
About Unofficial Human Protein Atlas MCP Server
No overview available yet
Basic information
Config
Add this server to your MCP-compatible client using the configuration below.
{
"mcpServers": {
"ProteinAtlas-MCP-Server": {
"command": "node",
"args": [
"build/index.js"
]
}
}
}Tools
No tools detected
We auto-extract tools from the README. The maintainer can list them under a ## Tools heading to populate this section.
Overview
What is Unofficial Human Protein Atlas MCP Server?
The Unofficial Human Protein Atlas MCP Server is a Model Context Protocol (MCP) server that provides programmatic access to Human Protein Atlas data, including protein expression, subcellular localization, pathology, and more. It is designed for researchers and developers needing to query protein information through MCP-compatible clients.
How to use Unofficial Human Protein Atlas MCP Server?
Install Node.js 18 or higher, run npm install and npm run build in the server directory, then start with npm start or node build/index.js. Integrate with any MCP client by adding the server’s command (e.g., "node") and path to build/index.js under the client’s mcpServers configuration.
Key features of Unofficial Human Protein Atlas MCP Server
- Search proteins by name, gene symbol, or description.
- Access tissue-specific expression profiles.
- Retrieve subcellular localization data.
- Obtain cancer and pathology information.
- Batch process multiple protein queries efficiently.
- Compare expression profiles across proteins.
Use cases of Unofficial Human Protein Atlas MCP Server
- Search for BRCA1 and retrieve detailed protein information.
- Get tissue expression for multiple genes using comparison.
- Find breast cancer prognostic markers.
- Look up multiple proteins at once with batch processing.
- Access blood or brain expression data for specific genes.
FAQ from Unofficial Human Protein Atlas MCP Server
What are the prerequisites for running the server?
Node.js 18 or higher and npm or yarn package manager are required.
How do I integrate this server with my MCP client?
Add an entry to your client’s mcpServers configuration with "command": "node" and "args": ["/path/to/proteinatlas-server/build/index.js"].
What data sources does the server access?
It accesses data from Human Protein Atlas, Tissue Atlas, Blood Atlas, Brain Atlas, Pathology Atlas, and Cell Atlas.
Are there any rate limits?
The server implements rate limiting to respect the Human Protein Atlas API; for batch operations, break large requests into smaller chunks.
What output formats are supported?
Formats include json, tsv, xml, and trig depending on the tool; json is the default.
More Other MCP servers
AutoBrowser MCP
autobrowser-aiBrowser MCP is a Model Context Provider (MCP) server that allows AI applications to control your browser
EverArt
modelcontextprotocolModel Context Protocol Servers
Mcp
browsermcpBrowser MCP is a Model Context Provider (MCP) server that allows AI applications to control your browser
Production-ready MCP integrations for AI applications
Klavis-AIKlavis AI: MCP integration platforms that let AI agents use tools reliably at any scale
Blender
ahujasidOpen-source MCP to use Blender with any LLM
Comments