Overview
what is Bio-OS MCP Server?
Bio-OS MCP Server is a Model Context Protocol (MCP) based tool designed for Bio-OS instance platforms, providing workflow management and Docker image building capabilities.
how to use Bio-OS MCP Server?
To use the Bio-OS MCP Server, you can either install it locally using VSCode with the CLINE extension or deploy it in the Miracle Cloud using a pre-configured Docker image. Follow the installation and configuration steps provided in the documentation to get started.
key features of Bio-OS MCP Server?
- Workflow management: Submit, monitor, and validate workflows.
- Docker image management: Build and check the status of Docker images.
- API reference for various functions related to workflow and Docker management.
use cases of Bio-OS MCP Server?
- Managing and executing complex bioinformatics workflows.
- Building and deploying Docker images for bioinformatics applications.
- Validating and generating input files for workflows.
FAQ from Bio-OS MCP Server?
- What are the prerequisites for local installation?
You need to install the Python package manager 'uv' and the Cromwell workflow execution engine.
- Can I use Bio-OS MCP Server in the cloud?
Yes! You can deploy it using a pre-configured Docker image in Miracle Cloud.
- Is there support for prompts in CLINE?
Currently, prompts are not supported in CLINE but are available when using the MCP server directly.