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Unofficial Human Protein Atlas MCP Server

@Augmented-Nature

Repository

Basic information

Category

Other

License

MIT license

Transports

stdio

Author

Augmented-Nature

About Unofficial Human Protein Atlas MCP Server

No overview available yet

#proteinatlas#mcp-server#data-access

Unofficial Human Protein Atlas MCP Server config

Add this server to your MCP-compatible client using the configuration below.

{
  "mcpServers": {
    "ProteinAtlas-MCP-Server": {
      "command": "node",
      "args": [
        "build/index.js"
      ]
    }
  }
}

Unofficial Human Protein Atlas MCP Server tools

Tool list not available yet

This listing does not currently have a tool list to display. This does not mean the server has no tools; check its documentation for supported capabilities.

We auto-extract tools from the README. The maintainer can list them under a ## Tools heading to populate this section.

Overview

What is Unofficial Human Protein Atlas MCP Server?

The Unofficial Human Protein Atlas MCP Server is a Model Context Protocol (MCP) server that provides programmatic access to Human Protein Atlas data, including protein expression, subcellular localization, pathology, and more. It is designed for researchers and developers needing to query protein information through MCP-compatible clients.

How to use Unofficial Human Protein Atlas MCP Server?

Install Node.js 18 or higher, run npm install and npm run build in the server directory, then start with npm start or node build/index.js. Integrate with any MCP client by adding the server’s command (e.g., "node") and path to build/index.js under the client’s mcpServers configuration.

Key features of Unofficial Human Protein Atlas MCP Server

  • Search proteins by name, gene symbol, or description.
  • Access tissue-specific expression profiles.
  • Retrieve subcellular localization data.
  • Obtain cancer and pathology information.
  • Batch process multiple protein queries efficiently.
  • Compare expression profiles across proteins.

Use cases of Unofficial Human Protein Atlas MCP Server

  • Search for BRCA1 and retrieve detailed protein information.
  • Get tissue expression for multiple genes using comparison.
  • Find breast cancer prognostic markers.
  • Look up multiple proteins at once with batch processing.
  • Access blood or brain expression data for specific genes.

Frequently asked questions

1

What are the prerequisites for running the server?

Node.js 18 or higher and npm or yarn package manager are required.

2

How do I integrate this server with my MCP client?

Add an entry to your client’s `mcpServers` configuration with `"command": "node"` and `"args": ["/path/to/proteinatlas-server/build/index.js"]`.

3

What data sources does the server access?

It accesses data from Human Protein Atlas, Tissue Atlas, Blood Atlas, Brain Atlas, Pathology Atlas, and Cell Atlas.

4

Are there any rate limits?

The server implements rate limiting to respect the Human Protein Atlas API; for batch operations, break large requests into smaller chunks.

5

What output formats are supported?

Formats include json, tsv, xml, and trig depending on the tool; json is the default.

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