Molecule Visualizer MCP Server

Name: Molecule Visualizer MCP Server
Author: leelasd

@leelasd

リポジトリ

Molecule Visualizer MCP Server について

MCP server for visualizing molecules in Claude Desktop :)

#molecule-visualizer #chemistry #molecular-properties

基本情報

カテゴリ

その他

ライセンス

Apache-2.0

ランタイム

jupyter notebook

トランスポート

stdio

公開者

leelasd

設定

以下の設定を使って、このサーバーを MCP 対応クライアントに追加してください。

{
  "mcpServers": {
    "molecule_mcp": {
      "command": "uv",
      "args": [
        "venv"
      ]
    }
  }
}

ツール

ツールは検出されませんでした

ツールは README から自動的に抽出されます。メンテナーは ## Tools という見出しの下に記載することで、このタブに反映できます。

概要

What is Molecule Visualizer MCP Server?

A Model Context Protocol server that provides tools for visualizing molecules and retrieving molecular properties using SMILES codes. It integrates with LLM applications like Claude Desktop for chemistry‑focused capabilities such as exploring structures, analyzing properties, and generating visualizations.

How to use Molecule Visualizer MCP Server?

Install Python 3.10+, RDKit, the MCP Python SDK, and Pillow. Run the setup script or use uv to install dependencies, then configure Claude Desktop by adding the server to claude_desktop_config.json. You can also run the server directly with python molecule_server.py.

Key features of Molecule Visualizer MCP Server

Generate 2D visualizations from SMILES strings or common names.
Return MCP Image objects for direct LLM integration.
Markdown‑compatible output with base64‑encoded images.
Customizable image dimensions and optional atom indices.
Calculate molecular properties including Lipinski’s Rule of Five.
Access a built‑in database of common molecules by name.

Use cases of Molecule Visualizer MCP Server

Exploring molecular structures and analyzing chemical properties.
Generating molecule visualizations for educational content or research assistance.
Integrating reliable chemistry capabilities into LLM‑based applications.