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BioRxiv MCP Server

@JackKuo666

リポジトリ

BioRxiv MCP Server について

🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface.

#biorxiv#bioinformatics#research-assistant

基本情報

カテゴリ

その他

ランタイム

python

トランスポート

stdio

公開者

JackKuo666

投稿者

lyonlin

設定

以下の設定を使って、このサーバーを MCP 対応クライアントに追加してください。

{
  "mcpServers": {
    "biorxiv": {
      "command": "bash",
      "args": [
        "-c",
        "source /home/YOUR/PATH/mcp-server-bioRxiv/.venv/bin/activate && python /home/YOUR/PATH/mcp-server-bioRxiv/biorxiv_server.py"
      ],
      "env": {},
      "disabled": false,
      "autoApprove": []
    }
  }
}

ツール

ツールは検出されませんでした

ツールは README から自動的に抽出されます。メンテナーは ## Tools という見出しの下に記載することで、このタブに反映できます。

概要

What is BioRxiv MCP Server?

The BioRxiv MCP Server bridges AI assistants and bioRxiv's preprint repository through the Model Context Protocol (MCP). It allows AI models to search for biology preprints and access their metadata programmatically. It is designed for researchers and AI users who need to query bioRxiv content.

How to use BioRxiv MCP Server?

Install the server by cloning the repository and running pip install -r requirements.txt, or use Smithery for Claude/Cursor/Windsurf/CLine. Start the server with python biorxiv_server.py and add the MCP configuration to your client’s config file. Ask the AI assistant to search papers using keywords or to retrieve metadata by DOI.

Key features of BioRxiv MCP Server

  • Paper search with keywords or advanced queries
  • Fast retrieval of paper metadata
  • Access detailed metadata for specific papers
  • Download and read full paper content
  • Local storage of papers for faster access
  • Specialized prompts for paper analysis

Use cases of BioRxiv MCP Server

  • Search for recent bioRxiv papers about a specific topic
  • Retrieve full metadata for a known preprint DOI
  • Download papers for offline reading and analysis
  • Automate literature surveys with AI assistance

FAQ from BioRxiv MCP Server

What are the prerequisites to run the server?

Python 3.10 or higher and the FastMCP library are required.

How can I install the server automatically via Smithery?

Run the Smithery CLI command for your client (e.g., npx -y @smithery/cli@latest install @JackKuo666/biorxiv-mcp-server --client claude --config "{}").

What MCP tools does the server provide?

Three tools: search_biorxiv_key_words, search_biorxiv_advanced, and get_biorxiv_metadata (using a DOI).

Where are downloaded papers stored?

Papers are saved locally on your machine for faster subsequent access.

Is this tool intended for commercial use?

No – the disclaimer states the tool is for research purposes only, and users must respect bioRxiv’s terms of service.

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